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Optimized Multicolor Immunofluorescence Panel

Optimized Multicolor Immunofluorescence Panel, abbreviation OMIP, was a series of standardized multi-color flow cytometry panel launched by International Society for Advancement of Cytometry (ISAC), published in the form of columns in Cytometry Part A.[1][2][3] The first two OMIP articles were published in September 2010 issue of this journal.[4]

Purpose

The goals of OMIPs are: (1) to alleviate the development time for researchers who wish to use the same (or highly similar) panels, (2) to provide a starting point for the creation of novel OMIPs, and (3) to provide a mechanism for attribution to the developers of the panel via citation of the publication.[1]

List

No. color Purpose Species Cell types Paper Year Cytometry
OMIP-001 16 T-cell cytokine production after in vitro stimulation and phenotyping of cytokine-producing T-cells Human PBMC [5][4] 2010 BD LSR II
OMIP-002 16 Specificity and phenotype of CD8+ T-cells Human PBMC, bone marrow mononuclear cells [6][4] 2010 BD LSR II
OMIP-003 12 Phenotyping memory B cells human PBMC, bone marrow, and tonsil mononuclear cell [7] 2011 BD LSR II
OMIP-004 15 Determine Treg levels and to provide an in depth characterization of Tregs Human PBMC, ACK-lysed blood [8] 2012 BD LSRFortessa
OMIP-005 11 T cell cytokine production and memory phenotype Rhesus macaque PBMC [9] 2012 BD LSR II
OMIP-006 9 Enumerating and phenotyping of T regulatory cells and subsets Human PBMC [10] 2012 BD LSR II
OMIP-007 14 Characterize the phenotype, maturation, and activation of NK cells Human PBMC [11] 2012
OMIP-008 11 T cell cytokine production following in vitro stimulation Human PBMC, T cell clones/lines, tumor-resident T cell lines [12] 2012
OMIP-009 10 phenotype and function of CD4+ and CD8+ T-cells Human PBMC [13] 2012
OMIP-010 10 immunophenotyping of small hematopoietic cell Human Cerebrospinal fluid, bone marrow, peripheral blood [14] 2012
OMIP-011 8 Characterization of CECs in peripheral blood Human Whole blood, RBC-lysed and washed [15] 2012
OMIP-012 9 Human leukocyte reconstitution and phenotype Humanized mouse Whole blood, Ficoll-separated PBMC, splenocytes [16] 2012
OMIP-013 13 T-cell differentiation Human PBMC [17] 2012
OMIP-014 12 T-cell cytokine production and function after in vitro stimulation Human Cryopreserved PBMC [18] 2012
OMIP-015 13 T-reg characterization and T-cell activation Human PBMC [19] 2013
OMIP-016 10 Quality and phenotype of antigen-specific CD4 and CD8 T cells Cynomolgus macaque or Human Fresh or cryopreserved PBMCs [20] 2013
OMIP-017 13 CD4+ helper T-cell subsets (Th1, Th2, Th9, Th17, Th17Th1, Th22 and TFH) Human PBMC [21] 2013
OMIP-018 15 Phenotype of CD4 T cell subsets via chemokine receptor expression Human Fresh PBMC, Bone marrow mononuclear cells [22][23] 2013
OMIP-019 14 γδT-cells, iNKT-cells, haematopoietic precursors Human PBMC [24] 2013
OMIP-020 12 γδ T-cell differentiation phenotype Human PBMC [25] 2014
OMIP-021 14 NKT cells, γδ T-cells, MAIT cells, Memory T cell subsets Human PBMC [26] 2014
OMIP-022 14 T-cell phenotyping, memory categorization, cytokine production, and function following in vitro stimulation Human Cryopreserved PBMC (adult and infant) [27] 2014
OMIP-023 10 In-depth phenotyping of the main leukocyte subtypes in one run Human Fresh EDTA-treated peripheral blood, RBC-lysed and Fresh EDTA-treated Cord-blood [28] 2014
OMIP-024 18 Characterize the phenotype of PBMC leukocyte subsets Human Cryopreserved PBMC from adults and infants [29] 2014
OMIP-025 16 Characterization of antigen-specific T cells, TFH-like cells and NK cells Human Cryopreserved PBMC [30] 2014
OMIP-026 14 Phenotype of B and plasma cells Rhesus macaque, African green monkey Fresh whole blood, PBMCs, mononuclear cells of bone marrow, lymph node, spleen, tonsil [31] 2015
OMIP-027
OMIP-028
OMIP-029
OMIP-030
OMIP-031
OMIP-032 [32]
OMIP-033
OMIP-034
OMIP-035
OMIP-036
OMIP-037
OMIP-038
OMIP-039
OMIP-040
OMIP-041
OMIP-042
OMIP-043
OMIP-044
OMIP-045
OMIP-046
OMIP-047
OMIP-048
OMIP-049 Analysis of Human Myelopoiesis and Myeloid Neoplasms [33]
OMIP-050 28 [34]
OMIP-051
OMIP-052
OMIP-053
OMIP-054
OMIP-055
OMIP-056
OMIP-057
OMIP-058
OMIP-059
OMIP-060
OMIP-061
OMIP-062 14 Myeloid and innate/adaptive lymphoid comprehensive immunophenotyping Human Whole peripheral blood, cord blood, PBMCs, nasal aspirate, and tracheal aspirate samples [35]
OMIP-063
OMIP-064
OMIP-065
OMIP-066
OMIP-067
OMIP-068
OMIP-069
OMIP-070
OMIP-071
OMIP-072
OMIP-073
OMIP-074
OMIP-075
OMIP-076
OMIP-077
OMIP-078
OMIP-079
OMIP-080
OMIP-081
OMIP-082 25
OMIP-083 18
OMIP-084 28
OMIP-085 8
OMIP-086 22
OMIP-087
OMIP-088
OMIP-089 8
OMIP-090 18
OMIP-091 27
OMIP-092 6
OMIP-093 41
OMIP-094 24
OMIP-095
OMIP-096
OMIP-097
OMIP-098
OMIP-099
OMIP-100
OMIP-101 27

References

  1. ^ a b Mahnke, Yolanda; Chattopadhyay, Pratip; Roederer, Mario (September 2010). "Publication of optimized multicolor immunofluorescence panels". Cytometry Part A. 77A (9): 814–818. doi:10.1002/cyto.a.20916. PMID 20722004.
  2. ^ Tárnok, A (September 2016). "OMIPs start school". Cytometry. Part A. 89 (9): 795–6. doi:10.1002/cyto.a.22976. PMID 27657547.
  3. ^ Mahnke, Y; Tárnok, A (28 September 2020). "Celebrating 10 Years of OMIPs". Cytometry. Part A. doi:10.1002/cyto.a.24233. PMID 32985101.
  4. ^ a b c Roederer, M; Tárnok, A (September 2010). "OMIPs--Orchestrating multiplexity in polychromatic science". Cytometry. Part A. 77 (9): 811–2. doi:10.1002/cyto.a.20959. PMID 20722007.
  5. ^ Mahnke, YD; Roederer, M (September 2010). "OMIP-001: Quality and phenotype of Ag-responsive human T-cells". Cytometry. Part A. 77 (9): 819–20. doi:10.1002/cyto.a.20944. PMID 20722005.
  6. ^ Chattopadhyay, PK; Roederer, M; Price, DA (September 2010). "OMIP-002: Phenotypic analysis of specific human CD8+ T-cells using peptide-MHC class I multimers for any of four epitopes". Cytometry. Part A. 77 (9): 821–2. doi:10.1002/cyto.a.20945. PMID 20722006.
  7. ^ Wei, C; Jung, J; Sanz, I (November 2011). "OMIP-003: phenotypic analysis of human memory B cells". Cytometry. Part A. 79 (11): 894–6. doi:10.1002/cyto.a.21112. PMC 3199331. PMID 21796774.
  8. ^ Biancotto, A; Dagur, PK; Fuchs, JC; Langweiler, M; McCoy JP, Jr (January 2012). "OMIP-004: in-depth characterization of human T regulatory cells". Cytometry. Part A. 81 (1): 15–6. doi:10.1002/cyto.a.21158. PMC 3510978. PMID 22052639.
  9. ^ Foulds, KE; Donaldson, M; Roederer, M (May 2012). "OMIP-005: Quality and phenotype of antigen-responsive rhesus macaque T cells". Cytometry. Part A. 81 (5): 360–1. doi:10.1002/cyto.a.22008. PMC 11389872. PMID 22438313.
  10. ^ Murdoch, DM; Staats, JS; Weinhold, KJ (April 2012). "OMIP-006: phenotypic subset analysis of human T regulatory cells via polychromatic flow cytometry". Cytometry. Part A. 81 (4): 281–3. doi:10.1002/cyto.a.22024. PMC 3352600. PMID 22319016.
  11. ^ Eller, MA; Currier, JR (June 2012). "OMIP-007: phenotypic analysis of human natural killer cells". Cytometry. Part A. 81 (6): 447–9. doi:10.1002/cyto.a.22033. PMID 22411905.
  12. ^ Zuleger, CL; Albertini, MR (June 2012). "OMIP-008: measurement of Th1 and Th2 cytokine polyfunctionality of human T cells". Cytometry. Part A. 81 (6): 450–2. doi:10.1002/cyto.a.22035. PMC 3418807. PMID 22431369.
  13. ^ Lamoreaux, L; Koup, RA; Roederer, M (May 2012). "OMIP-009: Characterization of antigen-specific human T-cells". Cytometry. Part A. 81 (5): 362–3. doi:10.1002/cyto.a.22042. PMID 22438322.
  14. ^ Preijers, FW; Huys, E; Moshaver, B (June 2012). "OMIP-010: a new 10-color monoclonal antibody panel for polychromatic immunophenotyping of small hematopoietic cell samples". Cytometry. Part A. 81 (6): 453–5. doi:10.1002/cyto.a.22056. PMID 22532446.
  15. ^ Lachmann, R; Lanuti, P; Miscia, S (July 2012). "OMIP-011: Characterization of circulating endothelial cells (CECs) in peripheral blood". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 81 (7): 549–51. doi:10.1002/cyto.a.22071. PMID 22648996.
  16. ^ Long, BR; Stoddart, CA (August 2012). "OMIP-012: Phenotypic and numeric determination of human leukocyte reconstitution in humanized mice". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 81 (8): 646–8. doi:10.1002/cyto.a.22074. PMID 22653780.
  17. ^ Mahnke, YD; Beddall, MH; Roederer, M (November 2012). "OMIP-013: differentiation of human T-cells". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 81 (11): 935–6. doi:10.1002/cyto.a.22201. PMID 23027685.
  18. ^ De Rosa, SC; Carter, DK; McElrath, MJ (December 2012). "OMIP-014: validated multifunctional characterization of antigen-specific human T cells by intracellular cytokine staining". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 81 (12): 1019–21. doi:10.1002/cyto.a.22218. PMC 3581864. PMID 23081852.
  19. ^ Mahnke, YD; Beddall, MH; Roederer, M (February 2013). "OMIP-015: human regulatory and activated T-cells without intracellular staining". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 83 (2): 179–81. doi:10.1002/cyto.a.22230. PMID 23166007.
  20. ^ Guenounou, S; Bosquet, N; Dembek, CJ; Le Grand, R; Cosma, A (February 2013). "OMIP-016: Characterization of antigen-responsive macaque and human T-cells". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 83 (2): 182–4. doi:10.1002/cyto.a.22233. PMID 23184609.
  21. ^ Mahnke, YD; Beddall, MH; Roederer, M (May 2013). "OMIP-017: human CD4(+) helper T-cell subsets including follicular helper cells". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 83 (5): 439–40. doi:10.1002/cyto.a.22269. PMC 4347402. PMID 23450796.
  22. ^ Brodie, T; Brenna, E; Sallusto, F (June 2013). "OMIP-018: chemokine receptor expression on human T helper cells". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 83 (6): 530–2. doi:10.1002/cyto.a.22278. PMID 23504907.
  23. ^ Brodie, Tess; Brenna, Elena; Sallusto, Federica (2013). "Corrigendum for OMIP-018: Chemokine receptor expression on human T helper cells". Cytometry Part A. 83 (11): 1041–1045. doi:10.1002/cyto.a.22346.
  24. ^ Mahnke, YD; Beddall, MH; Roederer, M (August 2013). "OMIP-019: quantification of human γδT-cells, iNKT-cells, and hematopoietic precursors". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 83 (8): 676–8. doi:10.1002/cyto.a.22326. PMID 23897714.
  25. ^ Wistuba-Hamprecht, K; Pawelec, G; Derhovanessian, E (June 2014). "OMIP-020: phenotypic characterization of human γδ T-cells by multicolor flow cytometry". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 85 (6): 522–4. doi:10.1002/cyto.a.22470. PMID 24756989.
  26. ^ Gherardin, NA; Ritchie, DS; Godfrey, DI; Neeson, PJ (July 2014). "OMIP-021: Simultaneous quantification of human conventional and innate-like T-cell subsets". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 85 (7): 573–5. doi:10.1002/cyto.a.22475. PMID 24757011.
  27. ^ Graves, AJ; Padilla, MG; Hokey, DA (July 2014). "OMIP-022: Comprehensive assessment of antigen-specific human T-cell functionality and memory". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 85 (7): 576–9. doi:10.1002/cyto.a.22478. PMC 4231567. PMID 24866990.
  28. ^ Bocsi, J; Melzer, S; Dähnert, I; Tárnok, A (September 2014). "OMIP-023: 10-color, 13 antibody panel for in-depth phenotyping of human peripheral blood leukocytes". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 85 (9): 781–4. doi:10.1002/cyto.a.22505. PMID 25132115.
  29. ^ Moncunill, G; Han, H; Dobaño, C; McElrath, MJ; De Rosa, SC (December 2014). "OMIP-024: pan-leukocyte immunophenotypic characterization of PBMC subsets in human samples". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 85 (12): 995–8. doi:10.1002/cyto.a.22580. PMC 4457440. PMID 25352070.
  30. ^ Moncunill, G; Dobaño, C; McElrath, MJ; De Rosa, SC (April 2015). "OMIP-025: evaluation of human T- and NK-cell responses including memory and follicular helper phenotype by intracellular cytokine staining". Cytometry. Part A : The Journal of the International Society for Analytical Cytology. 87 (4): 289–92. doi:10.1002/cyto.a.22590. PMC 4454451. PMID 25407958.
  31. ^ Neumann, B; Sopper, S; Stahl-Hennig, C (September 2015). "OMIP-026: Phenotypic analysis of B and plasma cells in rhesus macaques". Cytometry. Part A. 87 (9): 800–2. doi:10.1002/cyto.a.22712. PMID 26115002.
  32. ^ Unsworth, A; Anderson, R; Haynes, N; Britt, K (June 2016). "OMIP-032: Two multi-color immunophenotyping panels for assessing the innate and adaptive immune cells in the mouse mammary gland". Cytometry. Part A. 89 (6): 527–30. doi:10.1002/cyto.a.22867. PMID 27214375.
  33. ^ Zhu, G; Brayer, J; Padron, E; Mulé, JJ; Mailloux, AW (October 2018). "OMIP-049: Analysis of Human Myelopoiesis and Myeloid Neoplasms". Cytometry. Part A. 93 (10): 982–986. doi:10.1002/cyto.a.23598. PMC 6484443. PMID 30347519.
  34. ^ Nettey, L; Giles, AJ; Chattopadhyay, PK (November 2018). "OMIP-050: A 28-color/30-parameter Fluorescence Flow Cytometry Panel to Enumerate and Characterize Cells Expressing a Wide Array of Immune Checkpoint Molecules". Cytometry. Part A. 93 (11): 1094–1096. doi:10.1002/cyto.a.23608. PMID 30347136.
  35. ^ Swieboda, D; Guo, Y; Sagawe, S; Thwaites, RS; Nadel, S; Openshaw, PJM; Culley, FJ (December 2019). "OMIP-062: A 14-Color, 16-Antibody Panel for Immunophenotyping Human Innate Lymphoid, Myeloid and T Cells in Small Volumes of Whole Blood and Pediatric Airway Samples". Cytometry. Part A. 95 (12): 1231–1235. doi:10.1002/cyto.a.23907. PMC 6972618. PMID 31633878.
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