AgBase

AgBase
Content
Description	functional genomics resource for agriculture.
Contact
Research center	University of Arizona
Authors	Fiona M McCarthy
Primary citation	McCarthy & al. (2006)
Release date	2006
Access
Website	https://agbase.arizona.edu/

AgBase is a curated genomic database containing functional annotations of agriculturally important animals, plants, microbes and parasites.^[1] AgBase biocurators provides annotation of Gene Ontology terms and Plant ontology terms for gene products.^[2] By 2011 AgBase provided information for 18 organisms including horse, cat, dog, cotton, rice and soybean.^[3]

References

^ ^a ^b McCarthy, Fiona M; Wang Nan; Magee G Bryce; Nanduri Bindu; Lawrence Mark L; Camon Evelyn B; Barrell Daniel G; Hill David P; Dolan Mary E; Williams W Paul; Luthe Dawn S; Bridges Susan M; Burgess Shane C (2006). "AgBase: a functional genomics resource for agriculture". BMC Genomics. 7. England: 229. doi:10.1186/1471-2164-7-229. PMC 1618847. PMID 16961921.
^ Pillai, L; Chouvarine, P; Tudor, C. O.; Schmidt, C. J.; Vijay-Shanker, K; McCarthy, F. M. (2012). "Developing a biocuration workflow for Ag Base, a non-model organism database". Database. 2012: bas038. doi:10.1093/database/bas038. PMC 3500517. PMID 23160411.{{cite journal}}: CS1 maint: article number as page number (link)
^ McCarthy, F. M.; Gresham, C. R.; Buza, T. J.; Chouvarine, P; Pillai, L. R.; Kumar, R; Ozkan, S; Wang, H; Manda, P; Arick, T; Bridges, S. M.; Burgess, S. C. (2011). "Ag Base: Supporting functional modeling in agricultural organisms". Nucleic Acids Research. 39 (Database issue): D497–506. doi:10.1093/nar/gkq1115. PMC 3013706. PMID 21075795.

External links

https://agbase.arizona.edu/

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[McCarthy-1] McCarthy, Fiona M; Wang Nan; Magee G Bryce; Nanduri Bindu; Lawrence Mark L; Camon Evelyn B; Barrell Daniel G; Hill David P; Dolan Mary E; Williams W Paul; Luthe Dawn S; Bridges Susan M; Burgess Shane C (2006). "AgBase: a functional genomics resource for agriculture". BMC Genomics. 7. England: 229. doi:10.1186/1471-2164-7-229. PMC 1618847. PMID 16961921.

[2] Pillai, L; Chouvarine, P; Tudor, C. O.; Schmidt, C. J.; Vijay-Shanker, K; McCarthy, F. M. (2012). "Developing a biocuration workflow for Ag Base, a non-model organism database". Database. 2012: bas038. doi:10.1093/database/bas038. PMC 3500517. PMID 23160411.{{cite journal}}: CS1 maint: article number as page number (link)

[3] McCarthy, F. M.; Gresham, C. R.; Buza, T. J.; Chouvarine, P; Pillai, L. R.; Kumar, R; Ozkan, S; Wang, H; Manda, P; Arick, T; Bridges, S. M.; Burgess, S. C. (2011). "Ag Base: Supporting functional modeling in agricultural organisms". Nucleic Acids Research. 39 (Database issue): D497–506. doi:10.1093/nar/gkq1115. PMC 3013706. PMID 21075795.

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AgBase

See also

References

External links