Source: Superleague Greece, Soccerway Rules for classification: 1) Points; 2) Head-to-head points; 3) Head-to-head goal difference; 4) Goals scored; 5) Goals against; 6) Play-offs (neutral ground); 7) Draw. (Note: Criteria 6 is only used if needed to decide champion, teams for relegation or teams for UEFA competitions).[30] (C) Champions Notes:
^Panathinaikos were deducted 3 points due to extreme fan behavior against Olympiacos. The match was awarded as a 3–0 win for Olympiacos.[28]
^AEK were deducted 3 points due to extreme fan behavior against Atromitos.[citation needed]
^PAOK were deducted 3 points due to extreme fan behavior against Olympiacos in Greek Cup semifinal match.[29]
^The fifth-placed team of the 2015–16 Superleague Greece Panionios would have qualified for the Europa League second qualifying round, but were excluded from participating in the 2016–17 European competitions by UEFA for financial reasons. As a result, the berth was given to the sixth-placed team PAS Giannina.