SH2 domain

Crystallographic structure of the SH2 domain. The structure consists of a large beta sheet (green) flanked by two alpha-helices (orange and blue).[1]
Identifiers
SymbolSH2
PfamPF00017
InterProIPR000980
SMARTSH2
PROSITEPDOC50001
SCOP21sha / SCOPe / SUPFAM
CDDcd00173
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

The SH2 (Src Homology 2) domain is a structurally conserved protein domain contained within the Src oncoprotein[2] and in many other intracellular signal-transducing proteins.[3] SH2 domains bind to phosphorylated tyrosine residues on other proteins, modifying the function or activity of the SH2-containing protein. The SH2 domain may be considered the prototypical modular protein-protein interaction domain, allowing the transmission of signals controlling a variety of cellular functions.[4] SH2 domains are especially common in adaptor proteins that aid in the signal transduction of receptor tyrosine kinase pathways.[5]

Structure and interactions

SH2 domains contain about 100 amino acid residues and exhibit a central antiparallel β-sheet centered between two α-helices.[6] Binding to phosphotyrosine-containing peptides involves a strictly-conserved Arg residue that pairs with the negatively-charged phosphate on the phosphotyrosine,[7] and a surrounding pocket that recognizes flanking sequences on the target peptide.[6][7] Compared to other signaling proteins, SH2 domains exhibit only a moderate degree of specificity for their target peptides, due to the relative weakness of the interactions with the flanking sequences.[8]

Over 100 human proteins are known to contain SH2 domains.[9] A variety of tyrosine-containing sequences have been found to bind SH2 domains and are conserved across a wide range of organisms, performing similar functions.[10] Binding of a phosphotyrosine-containing protein to an SH2 domain may lead to either activation or inactivation of the SH2-containing protein, depending on the types of interactions formed between the SH2 domain and other domains of the enzyme. Mutations that disrupt the structural stability of the SH2 domain, or that affect the binding of the phosphotyrosine peptide of the target, are involved in a range of diseases including X-linked agammaglobulinemia and severe combined immunodeficiency.[11]

Diversity

SH2 domains are not present in yeast and appear at the boundary between protozoa and animalia in organisms such as the social amoeba Dictyostelium discoideum.[12]

A detailed bioinformatic examination of SH2 domains of human and mouse reveals 120 SH2 domains contained within 115 proteins encoded by the human genome,[13] representing a rapid rate of evolutionary expansion among the SH2 domains.

A large number of SH2 domain structures have been solved and many SH2 proteins have been knocked out in mice.

Applications

SH2 domains, and other binding domains, have been used in protein engineering to create protein assemblies. Protein assemblies are formed when several proteins bind to one another to create a larger structure (called a supramolecular assembly). Using molecular biology techniques, fusion proteins of specific enzymes and SH2 domains have been created, which can bind to each other to form protein assemblies.

Since SH2 domains require phosphorylation in order for binding to occur, the use of kinase and phosphatase enzymes gives researchers control over whether protein assemblies will form or not. High affinity engineered SH2 domains have been developed and utilized for protein assembly applications.[14]

The goal of most protein assembly formation is to increase the efficiency of metabolic pathways via enzymatic co-localization.[15] Other applications of SH2 domain mediated protein assemblies have been in the formation of high density fractal-like structures, which have extensive molecular trapping properties.[16]

Examples

Human proteins containing this domain include:

See also

References

  1. ^ PDB: 1lkk​; Tong L, Warren TC, King J, Betageri R, Rose J, Jakes S (March 1996). "Crystal structures of the human p56lck SH2 domain in complex with two short phosphotyrosyl peptides at 1.0 A and 1.8 A resolution". Journal of Molecular Biology. 256 (3): 601–10. doi:10.1006/jmbi.1996.0112. PMID 8604142.
  2. ^ Sadowski I, Stone JC, Pawson T (December 1986). "A noncatalytic domain conserved among cytoplasmic protein-tyrosine kinases modifies the kinase function and transforming activity of Fujinami sarcoma virus P130gag-fps". Molecular and Cellular Biology. 6 (12): 4396–408. doi:10.1128/mcb.6.12.4396. PMC 367222. PMID 3025655.
  3. ^ Russell RB, Breed J, Barton GJ (June 1992). "Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains". FEBS Letters. 304 (1): 15–20. doi:10.1016/0014-5793(92)80579-6. PMID 1377638. S2CID 7046771.
  4. ^ Pawson T, Gish GD, Nash P (December 2001). "SH2 domains, interaction modules and cellular wiring". Trends in Cell Biology. 11 (12): 504–511. doi:10.1016/s0962-8924(01)02154-7. PMID 11719057.
  5. ^ Koytiger G, Kaushansky A, Gordus A, Rush J, Sorger PK, MacBeath G (May 2013). "Phosphotyrosine signaling proteins that drive oncogenesis tend to be highly interconnected". Molecular & Cellular Proteomics. 12 (5): 1204–13. doi:10.1074/mcp.M112.025858. PMC 3650332. PMID 23358503.
  6. ^ a b Sawyer TK (1998). "Src-homology 2 domains: Structure, mechanisms, and drug discovery". Biopolymers. 47 (3): 243–261. doi:10.1002/(SICI)1097-0282(1998)47:3<243::AID-BIP4>3.0.CO;2-P. PMID 9817027. S2CID 31800206.
  7. ^ a b Sheinerman FB, Al-Lazikani B, Honig B (2003). "Sequence, structure, and energetic determinants of phosphopeptide selectivity of SH2 domains". Journal of Molecular Biology. 334 (4): 823–841. doi:10.1016/j.jmb.2003.09.075. PMID 14636606.
  8. ^ Bradshaw JM, Waksman G (2002). "Molecular recognition by SH2 domains". Advances in Protein Chemistry. 61: 161–210. doi:10.1016/s0065-3233(02)61005-8. PMID 12461824.
  9. ^ Liu BA, Shah E, Jablonowski K, Stergachis A, Engelmann B, Nash PD (December 2011). "The SH2 domain-containing proteins in 21 species establish the provenance and scope of phosphotyrosine signaling in eukaryotes". Science Signaling. 4 (202): ra83. doi:10.1126/scisignal.2002105. PMC 4255630. PMID 22155787.
  10. ^ Ren S, Yang G, He Y, Wang Y, Li Y, Chen Z (October 2008). "The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains". BMC Genomics. 9: 452. doi:10.1186/1471-2164-9-452. PMC 2576256. PMID 18828911.
  11. ^ Filippakopoulos P, Mueller S, Knapp S (December 2009). "SH2 domains: Modulators of nonreceptor tyrosine kinase activity". Current Opinion in Structural Biology. 19 (6): 643–649. doi:10.1016/j.sbi.2009.10.001. PMC 2791838. PMID 19926274.
  12. ^ Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, et al. (May 2005). "The genome of the social amoeba Dictyostelium discoideum". Nature. 435 (7038): 43–57. Bibcode:2005Natur.435...43E. doi:10.1038/nature03481. PMC 1352341. PMID 15875012.
  13. ^ Liu BA, Jablonowski K, Raina M, Arcé M, Pawson T, Nash PD (June 2006). "The human and mouse complement of SH2 domain proteins-establishing the boundaries of phosphotyrosine signaling". Molecular Cell. 22 (6): 851–68. doi:10.1016/j.molcel.2006.06.001. PMID 16793553.
  14. ^ Kaneko, T.; Huang, H.; Cao, X.; Li, X.; Li, C.; Voss, C.; Sidhu, S. S.; Li, S. S. C. (2012-09-25). "Superbinder SH2 Domains Act as Antagonists of Cell Signaling". Science Signaling. 5 (243): ra68. doi:10.1126/scisignal.2003021. ISSN 1945-0877. PMID 23012655. S2CID 28562514.
  15. ^ Yang, Lu; Dolan, E.M.; Tan, S.K.; Lin, T.; Sontag, E.D.; Khare, S.D. (2017). "Computation-Guided Design of a Stimulus-Responsive Multienzyme Supramolecular Assembly". ChemBioChem. 18 (20): 2000–2006. doi:10.1002/cbic.201700425. ISSN 1439-7633. PMID 28799209. S2CID 13339534.
  16. ^ Hernández N.E., Hansen W.A., Zhu D., Shea M.E., Khalid M., Manichev V., Putnins M., Chen M., Dodge A.G., Yang L., Marrero-Berríos I., Banal M., Rechani P., Gustafsson T., Feldman L.C., Lee S-.H., Wackett L.P., Dai W., Khare S.D. (2019). Stimulus-responsive self-assembly of protein-based fractals by computational design. Nat. Chem. 2019 11(7): 605-614. Pre-print available at bioRxiv doi: 10.1101/274183.

Read other articles:

Amendemen Ketiga Puluh Empat Konstitusi IrlandiaLokasi IrlandiaTanggal22 Mei 2015 (2015-05-22) Hasil Suara % Ya 1.201.607 62,07% Tidak 734.300 37,93% Suara sah 1.935.907 99,29% Suara kosong atau tidak sah 13.818 0.71% Total suara 1,949,725 100.00% Pemilih terdaftar/hadir 3,221,681 60.52% Hasil menurut konstituensi Peta persebaran suara yang menyetujui amendemen:   72.5%–75%   70%–72.49%   67.5%–69.99%   65%–67.49%   62.5%–64.99%...

 

Dawuh GuruLogo Dawuh GuruuTanggal pendirian27 November 2017PendiriAhmad Ali AdhimDidirikan diYogyakartaTipeKomunitas Kreator Konten KeislamanKantor pusatJl. Tambora RT 01 RW 04 Kalipang, Sugio, LamonganLokasiLamongan, IndonesiaPemilikAhmad Ali AdhimSitus webdawuhguru.co.id Dawuh Guru adalah komunitas pembuatan konten quote-quote[1] keislaman yang berasal dari Indonesia.[2] Namanya dikenal melalui karya desainnya yang tersebar di berbagai media diantaranya Instagram, Facebook, ...

 

2004 French filmThe LightTheatrical release posterL'ÉquipierDirected byPhilippe LioretWritten byPhilippe Lioret Emmanuel Courcol Christian SinnigerProduced byChristophe RossignonStarringGrégori DerangèreSandrine BonnairePhilippe TorretonÉmilie DequenneCinematographyPatrick BlossierEdited byMireille LeroyMusic byNicola PiovaniDistributed byMars FilmsRelease date 3 November 2004 (2004-11-03) Running time94 minutesCountryFranceLanguageFrenchBudget$7.6 millionBox office$5.2 mil...

History of law enforcement for Queensland, Australia Governor of Queensland inspecting the mounted police, Brisbane, circa 1940 The history of the Queensland Police Service in Queensland, Australia, commenced in 1864, five years after the Separation of Queensland from New South Wales in 1859. This timeline highlights significant developments in Queensland policing. 1860s The uniform worn by Queensland police officers after separation in 1859 was a dark blue jacket and top with a forage cap, s...

 

Norwegian (atau National) Advanced Surface-to-Air Missile System Nampak radar, peluncur, dan rudal dari sistem NASAMS Jenis Sistem rudal darat ke udara Negara asal Amerika Serikat/Norwegia Sejarah pemakaian Masa penggunaan 1997–sekarang Digunakan oleh Simak Pengguna Pada perang Perang Rusia-Ukraina Sejarah produksi Perancang Kongsberg Defence & Aerospace Produsen Kongsberg Defence & Aerospace dan Raytheon Missiles & Defense Spesifikasi Awak 2 Jarak efek...

 

Sabrina Fanchini Sabrina Fanchini a Zell am See nel 2015 Nazionalità  Italia Altezza 155 cm Peso 57 kg Sci alpino Specialità Slalom gigante, slalom speciale, supercombinata Squadra  Esercito Termine carriera 2016   Modifica dati su Wikidata · Manuale Sabrina Fanchini (Lovere, 17 agosto 1988) è un'ex sciatrice alpina italiana. È sorella di Elena e Nadia, a loro volta sciatrici alpine di alto livello[1]. Indice 1 Biografia 2 Palmarès 2.1 Coppa del Mondo 2.2 Co...

В логике, логическая форма утверждения — структурная основа, выраженная через логические операторы, такие как кванторы, связки и переменные. Точно определённая семантическая версия высказывания в формальной системе является абстрактным описанием смысла высказыван...

 

1996 single by The BraxtonsSo Many WaysSingle by The Braxtonsfrom the album High School High soundtrack and So Many Ways ReleasedJuly 23, 1996RecordedNovember 1995GenreR&Bhip hoppopLength3:54 5:37 (remix)LabelAtlanticSongwriter(s)Carl-So-LoweJermaine DupriProducer(s)Jermaine DupriThe Braxtons singles chronology Family (1990) So Many Ways (1996) Only Love (1997) So Many Ways is a song by American vocal group the Braxtons, released on July 23, 1996 as the lead single from their debut album,...

 

Yosiwo GeorgeGeorge pada tahun 2015 Wakil Presiden Negara Federasi MikronesiaMasa jabatan11 Mei 2015 – Agustus 2022Presiden Peter M. Christian David W. Panuelo PendahuluAlik AlikPenggantiPetahana Informasi pribadiLahirYosiwo Palikkun George(1941-07-24)24 Juli 1941Kosrae, Mandat Pasifik Selatan, Kekaisaran JepangMeninggalAgustus 2022 (umur 81)Partai politikIndependenSuami/istriAntilise W. MackwelungAnak7Alma mater Universitas Hawaii di Manoa Universitas New Mexico (BS) Sunting kotak...

Rugby playerTendai MtawariraMtawarira in 2008Full nameTendai MtawariraDate of birth (1985-08-01) 1 August 1985 (age 38)Place of birthHarare, ZimbabweHeight1.88 m (6 ft 2 in)Weight120 kg (260 lb; 18 st 13 lb)SchoolChurchill SchoolPeterhouse Boys' SchoolOccupation(s)Rugby union playerRugby union careerPosition(s) Loosehead PropSenior careerYears Team Apps (Points)2020 Old Glory DC 2 (0) Correct as of 5 December 2022Provincial / State sidesYears Team...

 

British rifle cartridge Also known as 11.43x60R (61R) .577/450 Martini–Henry.577 Snider, two .577/450 Martini–Henry (coiled brass & drawn brass) and .303 British cartridges.Place of originUKService historyUsed byBritish EmpireWarsAnglo-Zulu WarMahdist WarFirst Boer War Second Boer WarWorld War IProduction historyDesigned1871SpecificationsParent case.577 SniderCase typeRimmed, bottleneckBullet diameter.455 in (11.6 mm)Neck diameter.487 in (1...

 

University of Cambridge Physics Department Cavendish LaboratoryCavendish plaque at original New Museums SiteEstablished1874AffiliationUniversity of CambridgeHead of departmentMete Atature[1]LocationCambridge, United Kingdom52°12′33″N 00°05′33″E / 52.20917°N 0.09250°E / 52.20917; 0.09250Cavendish Professor of PhysicsVacantWebsitewww.phy.cam.ac.uk The Cavendish Laboratory is the Department of Physics at the University of Cambridge, and is part of the ...

This list of bridges in Hungary lists bridges of particular historical, scenic, architectural or engineering interest. Road and railway bridges, viaducts, aqueducts and footbridges are included. Major road and railway bridges This table presents the structures with spans greater than 100 meters (non-exhaustive list). Name Hungarian Span Length Type CarriesCrosses Opened Location Region Ref. 1 Pentele Bridge Dunaújvárosi híd 308 m (1,010 ft) 1,670 m (5,480 ft) ArchSteel...

 

Group of Oto-Manguean languages of southern Mexico Not to be confused with Mazahua language. MazatecEn NgixoRegionMexico, states of Oaxaca, Puebla and VeracruzEthnicityMazatecNative speakers240,000 (2020 census)[1]Language familyOto-Manguean PopolocanMazatecOfficial statusOfficial language inIn Mexico through the General Law of Linguistic Rights of Indigenous Peoples (in Spanish).Language codesISO 639-3Variously:maa – Tecóatlmaj – Jalapamaq –&...

 

J. Hillis MillerHealth Science CenterTypePublic Academic Health CenterEstablished1956Parent institutionUniversity of FloridaEndowment$1.73 billion (2018)[1]DeanColleen G. KochStudents7,010[2]LocationGainesville, Jacksonville, Florida, USA29°38′N 82°21′W / 29.64°N 82.35°W / 29.64; -82.35Websiteufhealth.org J. Hillis Miller the fourth president of the University of Florida. The University of Florida Health Science Center (HSC), also known as the J...

Military campaign, American Civil War For the campaign of the American Revolutionary War, see Southern theater of the American Revolutionary War. Campaign of the CarolinasPart of the Western Theater of the American Civil WarThe Burning of Columbia, South Carolina, onFebruary 17, 1865, as depicted in Harper's WeeklyDateJanuary 1 – April 26, 1865LocationCarolinasResult Union victory: Unconditional surrender of the Army of the South on April 26, 1865 Effective end of the American Civil WarTerr...

 

2002 United States Senate election in West Virginia ← 1996 November 5, 2002 2008 →   Nominee Jay Rockefeller Jay Wolfe Party Democratic Republican Popular vote 275,281 160,902 Percentage 63.11% 36.89% County resultsRockefeller:      50–60%      60–70%      70–80%      80–90%Wolfe:      50–60%      60–...

 

  关于与「臺灣民眾黨 (1927年)」標題相近或相同的条目页,請見「民眾黨」。  此条目页的主題是日治時期台灣政黨。关于現代台灣同名政黨,請見「台灣民眾黨」。 此條目需要补充更多来源。 (2019年8月2日)请协助補充多方面可靠来源以改善这篇条目,无法查证的内容可能會因為异议提出而被移除。致使用者:请搜索一下条目的标题(来源搜索:臺灣民眾黨 (1...

Cet article concerne la ville tunisienne moderne. Pour la cité antique, voir Site archéologique de Sbeïtla. Cet article est une ébauche concernant une localité tunisienne. Vous pouvez partager vos connaissances en l’améliorant (comment ?) selon les recommandations des projets correspondants. Sbeïtla Arc de Dioclétien. Administration Pays Tunisie Gouvernorat Kasserine Délégation(s) Sbeïtla Code postal 1250[1] Démographie Gentilé Sbeïtlien Population 24 597 h...

 

American singer and songwriter Edwin StarrBackground informationBirth nameCharles Edwin HatcherBorn(1942-01-21)January 21, 1942Nashville, Tennessee, U.S.DiedApril 2, 2003(2003-04-02) (aged 61)Chilwell, Nottinghamshire, England, UK[1]GenresSoulR&Bfunkdiscopsychedelic soulOccupation(s)Singer, songwriterYears active1962–2002LabelsRic-TicMotown20th CenturyMotorcityWebsiteedwinstarr.infoMusical artist Charles Edwin Hatcher (January 21, 1942 – April 2, 2003),[2] known b...