Polymyxin

Colistin
Polymyxin B (R=H is polymyxin B2, R=CH3 is polymyxin B1)

Polymyxins are antibiotics. Polymyxins B and E (also known as colistin) are used in the treatment of Gram-negative bacterial infections. They work mostly by breaking up the bacterial cell membrane. They are part of a broader class of molecules called nonribosomal peptides.

They are produced in nature by Gram-positive bacteria such as Paenibacillus polymyxa.

Medical use

Polymyxin antibiotics are relatively neurotoxic and nephrotoxic, so are usually used only as a last resort if modern antibiotics are ineffective or are contraindicated. Typical uses are for infections caused by strains of multiple drug-resistant Pseudomonas aeruginosa or carbapenemase-producing Enterobacteriaceae.[1][2] Polymyxins have less effect on Gram-positive organisms, and are sometimes combined with other agents (as with trimethoprim/polymyxin) to broaden the effective spectrum.[3]

Polymyxins B are not absorbed from the gastrointestinal tract, so they are only administered orally if the goal is to disinfect the GI tract.[3] Another route of administration is chosen for systemic treatment, e.g., parenteral (often intravenously) or by inhalation.[1][3] They are also used externally as a cream or drops to treat otitis externa (swimmers ear), and as a component of triple antibiotic ointment to treat and prevent skin infections.[3][4]

Mechanism of action

After binding to lipopolysaccharide (LPS) in the outer membrane of Gram-negative bacteria, polymyxins disrupt both the outer and inner membranes. The hydrophobic tail is important in causing membrane damage, suggesting a detergent-like mode of action.[1]

Removal of the hydrophobic tail of polymyxin B yields polymyxin nonapeptide, which still binds to LPS, but no longer kills the bacterial cell. However, it still detectably increases the permeability of the bacterial cell wall to other antibiotics, indicating that it still causes some degree of membrane disorganization.[5]

Gram-negative bacteria can develop resistance to polymyxins through various modifications of the LPS structure that inhibit the binding of polymyxins to LPS.[6]

Antibiotic resistance to this drug has been increasing, especially in southern China. Recently the gene mcr-1, which confers the antibiotic resistance, has been isolated from bacterial plasmids in Enterobacteriaceae.[7][8]

Chemistry

Numbers denote sequence of amino acid loading.

Polymyxins are a group of cyclic non-ribosomal polypeptide (NRPs) which are biosynthesized by bacteria belonging to the genus Paenibacillus. Polymyxins consist of 10 amino acid residues, six of which are L-α,γ-diaminobutyric acid (L-DAB). The DAB residues cause polymyxins to have multiple positively charged groups at physiological pH. Seven amino acid residues form the main cyclic component, while the other three extend from one of the cyclic residues as a linear chain terminating in either 6-methyloctanoic acid or 6-methylheptanoic acid at the N-terminus. During cyclization, residue 10 is bound to the bridging residue 4.[9] The amino acid residues and DAB monomers are generally in the L (levo) configuration, however certain strains such as P. polymyxa PKB1 have been observed to incorporate DAB with the D (dextro) configuration at position 3 producing variations of polymyxin B.[10]

Polymyxin M is also known as "mattacin".[11]

Biosynthesis

Multiple enzyme domains to form Polymyxin D natural product

The polymyxins are produced by nonribosomal peptide synthetase systems in Gram-positive bacteria such as Paenibacillus polymyxa. Like other NRPs, polymyxins are assembled by synthetases with multiple modules, each containing a set of enzyme domains that sequentially operate on the growing chain by adding the next residue and extending the chain through peptide-bond formation and condensation reactions. The final steps involve a thioesterase domain at the C-terminal of the last module to cyclize the molecule and liberate the chain from the enzyme.[12]

Research

Polymyxins are used to neutralize or absorb LPS contaminants in samples, for example in immunological experiments. Minimization of LPS contamination can be important because LPS can evoke strong reactions from immune cells, distorting experimental results.

By increasing permeability of the bacterial membrane system, polymyxin is also used in clinical work to increase the release of secreted toxins, such as Shiga toxin, from Escherichia coli.[13]

The global problem of advancing antimicrobial resistance has led to a renewed interest in their use.[14]

Compound Mixtures in Polymyxin B drug

In formulations for the commercial pharmaceutical Polymyxin drug, the principal Polymyxins are B1 and B2, amounting to 75% and 15% of the final mixture, respectively.[15] Polymyxin B1, in turn, comprises several isomers, like isoleucine-polymyxin B1 and B1-1.[15] The major impediment in the purification and isolation of one isomer is due to the minimal structural differences between Polymyxin B1 and B2, differing only in one carbon at the 6th position of the fatty acyl side chain linked to the D-Phenylalanine of the structure. Polymyxin B1 contains 6-methyl octanoic acid, while Polymyxin B2 contains 6-methyl heptanoic acid.[16] Similarly, Polymyxins B3 and B4 also differ at this position, with B3 containing octanoic acid and B4 featuring heptanoic acid.[17]

See also

References

  1. ^ a b c Velkov T, Roberts KD, Nation RL, Thompson PE, Li J (June 2013). "Pharmacology of polymyxins: new insights into an 'old' class of antibiotics". Future Microbiology. 8 (6): 711–724. doi:10.2217/fmb.13.39. PMC 3852176. PMID 23701329.
  2. ^ Falagas ME, Kasiakou SK (February 2006). "Toxicity of polymyxins: a systematic review of the evidence from old and recent studies". Critical Care. 10 (1): R27. doi:10.1186/cc3995. PMC 1550802. PMID 16507149.
  3. ^ a b c d Poirel L, Jayol A, Nordmann P (April 2017). "Polymyxins: Antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes". Clinical Microbiology Reviews. 30 (2): 557–596. doi:10.1128/CMR.00064-16. PMC 5355641. PMID 28275006.
  4. ^ Ogbru O. "Neomycin sulfate (Cortisporin): Drug Side Effects and Dosing". MedicineNet. Retrieved 11 June 2017.
  5. ^ Tsubery H, Ofek I, Cohen S, Fridkin M (2000-01-01). "Structure activity relationship study of polymyxin B nonapeptide". The Biology and Pathology of Innate Immunity Mechanisms. Advances in Experimental Medicine and Biology. Vol. 479. pp. 219–222. doi:10.1007/0-306-46831-X_18. ISBN 978-0-306-46409-6. PMID 10897422.
  6. ^ Tran AX, Lester ME, Stead CM, Raetz CR, Maskell DJ, McGrath SC, et al. (August 2005). "Resistance to the antimicrobial peptide polymyxin requires myristoylation of Escherichia coli and Salmonella typhimurium lipid A". The Journal of Biological Chemistry. 280 (31): 28186–28194. doi:10.1074/jbc.M505020200. PMID 15951433.
  7. ^ Wolf J (December 2015). "Antibiotic resistance threatens the efficacy of prophylaxis". The Lancet. Infectious Diseases. 15 (12): 1368–1369. doi:10.1016/S1473-3099(15)00317-5. PMID 26482598.
  8. ^ Liu YY, Wang Y, Walsh TR, Yi LX, Zhang R, Spencer J, et al. (February 2016). "Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study". The Lancet. Infectious Diseases. 16 (2): 161–168. doi:10.1016/S1473-3099(15)00424-7. PMID 26603172.
  9. ^ Dewick PM (2002-01-03). Medicinal Natural Products: A Biosynthetic Approach. John Wiley & Sons. ISBN 9780471496410.
  10. ^ Shaheen M, Li J, Ross AC, Vederas JC, Jensen SE (December 2011). "Paenibacillus polymyxa PKB1 produces variants of polymyxin B-type antibiotics". Chemistry & Biology. 18 (12): 1640–8. doi:10.1016/j.chembiol.2011.09.017. PMID 22195566.
  11. ^ Martin NI, Hu H, Moake MM, Churey JJ, Whittal R, Worobo RW, et al. (April 2003). "Isolation, structural characterization, and properties of mattacin (polymyxin M), a cyclic peptide antibiotic produced by Paenibacillus kobensis M". The Journal of Biological Chemistry. 278 (15): 13124–13132. doi:10.1074/jbc.M212364200. PMID 12569104.
  12. ^ Kopp F, Marahiel MA (August 2007). "Macrocyclization strategies in polyketide and nonribosomal peptide biosynthesis". Natural Product Reports. 24 (4): 735–749. doi:10.1039/b613652b. PMID 17653357.
  13. ^ Yokoyama K, Horii T, Yamashino T, Hashikawa S, Barua S, Hasegawa T, et al. (November 2000). "Production of shiga toxin by Escherichia coli measured with reference to the membrane vesicle-associated toxins". FEMS Microbiology Letters. 192 (1): 139–144. doi:10.1111/j.1574-6968.2000.tb09372.x. PMID 11040442.
  14. ^ Falagas ME, Grammatikos AP, Michalopoulos A (October 2008). "Potential of old-generation antibiotics to address current need for new antibiotics". Expert Review of Anti-Infective Therapy. 6 (5): 593–600. doi:10.1586/14787210.6.5.593. PMID 18847400. S2CID 13158593.
  15. ^ a b Meng M, Wang L, Liu S, Jaber OM, Gao L, Chevrette L, et al. (February 2016). "Simultaneous quantitation of polymyxin B1, polymyxin B2 and polymyxin B1-1 in human plasma and treated human urine using solid phase extraction and liquid chromatography-tandem mass spectrometry". Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1012–1013: 23–36. doi:10.1016/j.jchromb.2016.01.013. PMID 26803416.
  16. ^ Velkov T, Thompson PE, Nation RL, Li J (March 2010). "Structure--activity relationships of polymyxin antibiotics". Journal of Medicinal Chemistry. 53 (5): 1898–1916. doi:10.1021/jm900999h. PMC 2907661. PMID 19874036.
  17. ^ Orwa JA, Govaerts C, Busson R, Roets E, Van Schepdael A, Hoogmartens J (April 2001). "Isolation and structural characterization of polymyxin B components". Journal of Chromatography A. 912 (2): 369–373. doi:10.1016/s0021-9673(01)00585-4. PMID 11330807.