On 8 May 2008, at the age of 41, Commander Millán was shot to death at his Mexico City home just after arriving at midnight. He was hit eight times in the chest and once in a hand. He died a few hours later at Metropolitan Hospital.[1][2] Intelligence officials said it was highly likely that he was killed in retribution for the arrest on 21 January of Alfredo Beltrán Leyva.[1]
In June 2011, a federal judge sentenced his killer, Alejandro Ramirez Baez, to 60 years in prison along with an accomplice. Alejandro Ramirez Baez killed Edgar Millán Gomez on behalf of the Beltrán-Leyva Cartel.[4]