A Catholic, Lee opposed the reading of prayers at the start of Parliament, saying that any prayer would have an inevitable bias towards one faith or another.
Lee also served on the Auckland Provincial Council, representing the Northern Division electorate in 1857 and 1858.[3] He was chairman of the initial Auckland City Council. He fell ill with a chronic liver disease and a week later, on 29 January 1887, he died from peritonitis. He was survived by his wife.[1]