Agathon served like this until Pope Benjamin returned and died, at which time Agathon was officially named the pope of the Coptic Orthodox Church. This happened during the time of the Muslim conquest of Egypt and when Muawiyah I was ruling.[2] Unlike most popes who first serve as monks,[5] Agathon had never been a monk prior to becoming pope- yet he was successful.[4]
During his time as pope, the building of St. Macarius Church in the monastery at Wadi El Natrun was completed.[1]
Like many others before and after, according to the Coptic Orthodox Church, he was harassed. Sometime during his papacy, he was persecuted by a MelkiteByzantinePatriarch named Theodocius, who through his authority, levied large taxes on Agathon, made the people hate him and asked that he be killed. For this reason, Agathon stayed hidden in his cell until the threat of Theodocius went away.[1][3] Based on church beliefs, he chose his successor based on a dream where an angel told him who should follow him.[3]
^ abAtiya, Aziz Suryal. Pope in the Coptic Church. The Coptic encyclopedia, volume 6. p. 3. Archived from the original on 20 November 2016. Retrieved 20 November 2016.