Huber left Hanna-Barbera in 1996 following the company's merger with Turner Broadcasting. Along with Bill Burnett, Huber co-created and executive produced an Oh Yeah! Cartoons pilot on Nickelodeon, which would later air as ChalkZone as a full series. Huber continued his role in animation on Random! Cartoons and Adventure Time, created by Pendleton Ward originally for Nickelodeon and later greenlit by Cartoon Network, which premiered in 2010.
Animotion Works, a company founded by Huber, was launched in 2004 in Burbank, California. The company has produced the Danger Rangers series for PBS.
After Turner Broadcasting merged with Time Warner in October 1996, Huber left Hanna-Barbera once again to become an executive producer on Seibert's other animated shorts showcase, Oh Yeah! Cartoons, on Nickelodeon.[4] Huber's ChalkZone short from Oh Yeah! Cartoons, which he co-created with Bill Burnett, was picked up by Nickelodeon for a full series. It premiered on March 22, 2002, with the highest ratings for a new show premiere in the network's history at the time.[5] He continued to work with big idea cartoon incubators, consulting on Seibert's Random! Cartoons, which spawned Eric Robles' Fanboy & Chum Chum (in which he also directed the voice actors), Adventure Time by Pendleton Ward and Ward's Bravest Warriors. He continued to be involved with Bravest Warriors as a consultant to show runner Breehn Burns and as an animation director.