The station is on the ground level with two opposing unnumbered side platforms. The tracks run roughly east-west, and the station building is located on the north side of the north platform. The two platforms are connected by level crossing (without barriers or alarms) that runs in front of the station building. A waiting room is located on the south platform, facing the station building across the level crossing. Inside the station building there is a station office, a waiting room, and a toilet. It is an unattended station,.[1][2]
^ abcKawashima, Ryōzō (2013). 図説: 日本の鉄道 四国・九州ライン 全線・全駅・全配線・第5巻 長崎 佐賀 エリア [Japan Railways Illustrated. Shikoku and Kyushu. All lines, all stations, all track layouts. Volume 5 Nagasaki Saga area] (in Japanese). Kodansha. pp. 22, 67. ISBN9784062951647.
^ ab"神代駅" [Kōjiro Station]. hacchi-no-he.net. Retrieved 16 March 2018.
^Shimabara Railway (30 September 2019). "10月以降の鉄道・バスの各種変更について" [Changes in railway and bus from October] (in Japanese). Retrieved 13 October 2019.
^"第67版(令和2年)長崎県統計年鑑" [Nagasaki Prefecture Statistics Yearbook 67th Edition]. Nagasaki Prefectural Government website. Retrieved 16 March 2024. See table at section under Transportation and Communications.