On 23 October 2012, Noguera made his professional debut, starting and scoring his team's only in a 1–2 away loss against Gimnasia Jujuy.[1] On 9 February of the following year, he scored a brace in a 2–0 home win against the same team.[2]
Noguera scored seven goals during the campaign, as his side narrowly missed out promotion. After being an undisputed starter in 2013–14, contributing with 38 appearances and three goals as his side finally returned to Primera División.
Noguera made his debut in the main category of Argentine football on 8 August 2014, starting in a 0–3 loss at Godoy Cruz.[3] He scored his first goal in the division on 10 May of the following year, netting the last in a 3–0 away win against Aldosivi.[4]
Santos
On 21 February 2016, as his contract was due to expire, Noguera reached an agreement with Série A club Santos, with the deal being effective in May.[5] On 5 July he signed a contract until June 2021 with the club,[6] being officially presented a day later.
Noguera made his unofficial debut for the club on 8 October 2016, coming on as a first half substitute for Luiz Felipe and scoring his side's only in a 1–1 friendly draw against Benfica.[7] He made his Série A debut five days later, coming on as a late substitute for Renato in a 1–0 away win against São Paulo.[8]
Noguera scored his first official goal for Peixe on 16 October 2016, netting the equalizer in a 1–1 home draw against Grêmio.[9] He made his Copa Libertadores debut the following 5 July, replacing Kayke in a 3–2 away win against Atlético Paranaense.
On 8 January 2021, after his loan spells, Noguera terminated his contract with Santos.[10]
Estudiantes (loan)
On 23 January 2018, Noguera was loaned to Estudiantes for one year, with a buyout clause.[11]
^"Fabián Noguera puso la firma" [Fabián Noguera signed] (in Spanish). Estudiantes de la Plata. 23 January 2018. Retrieved 23 January 2018.
^"Noguera arriba cedit pel Santos FC" [Noguera arrives on loan from Santos FC] (in Catalan). Gimnàstic Tarragona. 22 January 2019. Retrieved 26 January 2019.