In computer science, the earth mover's distance (EMD)[1] is a measure of dissimilarity between two frequency distributions, densities, or measures, over a metric spaceD.
Informally, if the distributions are interpreted as two different ways of piling up earth (dirt) over D, the EMD captures the minimum cost of building the smaller pile using dirt taken from the larger, where cost is defined as the amount of dirt moved multiplied by the distance over which it is moved.
In some applications, it is convenient to represent a distribution as a signature, or a collection of clusters, where the -th cluster represents a feature of mass centered at .
In this formulation, consider signatures and . Let be the ground distance between clusters and . Then the EMD between and is given by the optimal flow , with the flow between and , that minimizes the overall cost.
subject to the constraints:
The optimal flow is found by solving this linear optimization problem. The earth mover's distance is defined as the work normalized by the total flow:
Variants and extensions
Unequal probability mass
Some applications may require the comparison of distributions with different total masses. One approach is to allow for partial matching,[1] where dirt from the more massive distribution is rearranged to make the less massive, and any leftover "dirt" is discarded at no cost.
Formally, let be the total weight of , and be the total weight of . We have:
where is the set of all measures whose projections are and .
Note that this generalization of EMD is not a true distance between distributions, as it does not satisfy the triangle inequality.
An alternative approach is to allow for mass to be created or destroyed, on a global or local level, as an alternative to transportation, but with a cost penalty. In that case one must specify a real parameter , the ratio between the cost of creating or destroying one unit of "dirt", and the cost of transporting it by a unit distance. This is equivalent to minimizing the sum of the earth moving cost plus times the L1 distance between the rearranged pile and the second distribution. The resulting measure is a true distance function.[4]
More than two distributions
The EMD can be extended naturally to the case where more than two distributions are compared. In this case, the "distance" between the many distributions is defined as the optimal value of a linear program. This generalized EMD may be computed exactly using a greedy algorithm, and the resulting functional has been shown to be Minkowski additive and convex monotone.[5]
The Hungarian algorithm can be used to get the solution if the domain D is the set {0, 1}. If the domain is integral, it can be translated for the same algorithm by representing integral bins as multiple binary bins.
As a special case, if D is a one-dimensional array of "bins" of length n, the EMD can be efficiently computed by scanning the array and keeping track of how much dirt needs to be transported between consecutive bins. Here the bins are zero-indexed:
An early application of the EMD in computer science was to compare two grayscale images that may differ due to dithering, blurring, or local deformations.[11] In this case, the region is the image's domain, and the total amount of light (or ink) is the "dirt" to be rearranged.
More generally, the EMD is used in pattern recognition to compare generic summaries or surrogates of data records called signatures.[1] A typical signature consists of list of pairs ((x1,m1), ... (xn,mn)), where each xi is a certain "feature" (e.g., color in an image, letter in a text, etc.), and mi is "mass" (how many times that feature occurs in the record). Alternatively, xi may be the centroid of a data cluster, and mi the number of entities in that cluster. To compare two such signatures with the EMD, one must define a distance between features, which is interpreted as the cost of turning a unit mass of one feature into a unit mass of the other. The EMD between two signatures is then the minimum cost of turning one of them into the other.
EMD analysis has been used for quantitating multivariate changes in biomarkers measured by flow cytometry, with potential applications to other technologies that report distributions of measurements.[12]
History
The concept was first introduced by Gaspard Monge in 1781,[13] in the context of transportation theory. The use of the EMD as a distance measure for monochromatic images was described in 1989 by S. Peleg, M. Werman and H. Rom.[11] The name "earth mover's distance" was proposed by J. Stolfi in 1994,[14] and was used in print in 1998 by Y. Rubner, C. Tomasi and L. G. Guibas.[1]
^Mark A. Ruzon; Carlo Tomasi (2001). "Edge, Junction, and Corner Detection Using Color Distributions". IEEE Transactions on Pattern Analysis and Machine Intelligence.
^Kristen Grauman; Trevor Darrel (2004). "Fast contour matching using approximate earth mover's distance". Proceedings of CVPR 2004.
^Jin Huang; Rui Zhang; Rajkumar Buyya; Jian Chen (2014). "MELODY-Join: Efficient Earth Mover's Distance Similarity Joins Using MapReduce". Proceedings of IEEE International Conference on Data Engineering.
^Jia Xu; Bin Lei; Yu Gu; Winslett, M.; Ge Yu; Zhenjie Zhang (2015). "Efficient Similarity Join Based on Earth Mover's Distance Using MapReduce". IEEE Transactions on Knowledge and Data Engineering.
^Jin Huang; Rui Zhang; Rajkumar Buyya; Jian Chen, M.; Yongwei Wu (2015). "Heads-Join: Efficient Earth Mover's Distance Join on Hadoop". IEEE Transactions on Parallel and Distributed Systems.
^ abS. Peleg; M. Werman; H. Rom (1989). "A unified approach to the change of resolution: Space and gray-level". IEEE Transactions on Pattern Analysis and Machine Intelligence. 11 (7): 739–742. doi:10.1109/34.192468. S2CID18415340.
^"Mémoire sur la théorie des déblais et des remblais". Histoire de l'Académie Royale des Science, Année 1781, avec les Mémoires de Mathématique et de Physique. 1781.