Throughout his career he devoted himself mainly to the construction of aqueducts and water pipes. In 1847 he was involved in the construction of the Suez Canal under Alois Negrelli. In 1855 he took over the plans for the construction of the aqueduct of Aurisina in Trieste.
Between 1860 and 1861 he was in charge of the construction of the aqueduct of the military arsenal in Pula. In 1864 he worked on Vienna's Emperor Franz Joseph water supply system on the grounds of his experience in hydrography. He was the lead chief engineer in the design and construction management from the springs to the elevated tank at the Rosenhügel in Hietzing, the 13th municipal District of Vienna. Emperor Franz Joseph I awarded Junker the Order of Franz Joseph for his work on this project.
Carl Junker (1873): Die Wasserversorgung der Stadt Wien, in: R. Stadler, Wien
Carl Junker (1985): Projekt der Zuleitung des Recca Flusses von St. Canzian, Trieste
References
Junker Karl. In: Österreichisches Biographisches Lexikon 1815–1950. Volume 3, Verlag der Österreichischen Akademie der Wissenschaften, Vienna 1965, p. 153 (Direct references on pages 153 and 154).