In August 2004, Bangladesh Bank placed in a watchlist of "problem banks".[4] The bank donated to Prime Minister Khaleda Zia's relief fund.[5] Md Enayet Ullah was appointed managing director of the bank.[6]
On 28 June 2022, Bangladesh Bank allowed Bangladesh Commerce Bank Limited to reschedule a 1.99 billion taka defaulted loan to SB Exim, which is owned by Shahjahan Bablu who faces allegations of money laundering through fake invoicing exports from the Bangladesh Financial Intelligence Unit.[13] The bank overspent corporate social responsibility fund on disaster management.[14][15] In July the bank launched sharia based banking services.[16] Bangladesh Commerce Bank Limited filed a check dishonour case against Marrin Vegetable Oils Limited, a subsidiary of Nurjahan Group.[17] The chairman of the group, Tipu Sultan and managing director, Jahir Ahmed, were sentenced to one year in jail in the case.[17] Rashid Ahmed Chowdhury was re-elected chairman of the board in October 2022.[18]