Molecular Theory of Water and Aqueous Solutions: Understanding Water. 2009, ISBN978-981-283-760-8.
Molecular Theory of Water and Aqueous Solutions, Part II: The role of Water in Protein Folding, Self assembly and Molecular Recognition, World Scientific (2011). ISBN9789814350532
Alice’s Adventures in Molecular Biology, World Scientific (2013). ISBN9789814417259
Myths and Verities in Protein Folding Theories, World Scientific (2016). ISBN9789814725996
Contributions to statistical mechanics in terms of information theory
In 2017, Ben-Naim posted three articles in arXiv.[1][2][3] In those articles, three radical ideas were introduced into a field which is considered as classical. The ideas followed from the new definition of entropy based on Shannon's measure of information. The three ideas are, briefly, as follows.
First, there is no relationship between either entropy or the second law of thermodynamics and the so called arrow of time. This false association between the Second Law and time was first suggested by Arthur Eddington. Also the Boltzmann's H-Theorem is not about the time dependence of the entropy, but the time dependence of the Shannon's measure of information. In this respect Boltzmann erred in interpreting his (-)H function as entropy.
Second, the application of the concept of entropy to the entire universe is unwarranted. This association has its origin in Clausius' statement that the entropy of the World always increases. Clausius, who is credited for the formulation of the second law, did not and could not understand the molecular interpretation of entropy. Unfortunately, the application of the concept of entropy to the entire universe features in many textbooks and in popular science books. This erroneous application is discussed in great detail in Ben-Naim's recent books: The Briefest History of Time, Entropy, the Truth the whole Truth and nothing but the Truth, and in Information, Entropy, Life and the Universe.
Third, the application of entropy and the Second Law to living organisms is totally unwarranted. The most famous statement about
entropy and life was made by Erwin Schrödinger, in his book What is Life?. In this book, Schrödinger not only discusses entropy and life and associates entropy with disorder, he also "invents" the concept of "negative entropy," which was later renamed negentropy by Léon Brillouin. This erroneous application is further discussed in Ben-Naim's books.
Ben-Naim is a modern antagonist of the term entropy. He advocates abandoning the word entropy altogether, and replacing it with "missing information". He also indicates that the Kelvin temperature scale artificially introduces the units of thermodynamic entropy. Because this temperature scale was introduced before the atomic, microscopic nature of matter was widely accepted, the Boltzmann constant was necessary. S = kBlog(W) could be expressed simply as S = log(W), if the energy units for temperature kBT were used.
A Farewell to Entropy. Statistical Thermodynamics Based on Information, World Scientific (2008). ISBN978-981-270-706-2
Discover Entropy and the Second Law of Thermodynamics, World Scientific (2010). ISBN978-981-4299-75-6
Entropy and the Second Law: Interpretation and Misss-Interpretationsss (2012). ISBN978-9-814-40755-7.
Statistical Thermodynamics, with Applications to Life Sciences, World Scientific (2014) ISBN9789814578202
Discover Probability; How to Use it, How to Avoid Misusing it and How it Affects Every Aspect of Your Life, World Scientific (2014). ISBN9789814616317
Information, Entropy, Life and the Universe. What we know and what we do not know, World Scientific (2015) ISBN9789814651677
The Briefest History of Time: The History of Histories of Time, And the misconstrued association between Entropy and Time, World Scientific (2016). ISBN978-9814749848
Entropy, The Truth, the Whole Truth and Nothing but the Truth, World Scientific (2016) ISBN9789813147669