^ abFC Podillya-Khmelnytskyi, FC Nyva-Svitanok Vinnytsia, FC Korosten and FC Arsenal Bila Tserkva enter the competition.
^FC Dynamo-3 Kyiv withdrew out of courtesy before the start of the next season to allow MFK Mykolaiv to enter the competition.
^FC Enerhiya Yuzhnoukrainsk withdrew from the PFL at the end of the season citing financial difficulties. However, the team indicated that they will return to the PFL in the 2009-10 season.[1] They did not hold to their promise.
^FC Naftovyk Dolyna withdrew after the first half of the season. Technical victories were awarded to their opponents in the second half of the season.[2]
^ abcFC Olimpik Kirovohrad, FC Poltava, FC Shakhtar Sverdlovsk, FC Komunalnyk Luhansk and FC Titan Donetsk enter the competition.
^FC Hazovyk-KhGV Kharkiv withdrew after the first half of the season. Technical victories were awarded to their opponents in the second half of the season.[3]
CMS stands for Central Municipal Stadium, the name of each stadium that doesn't carry any official names, and is followed by the city's name where the stadium is located. Usually such stadiums are the property of the city with a generic name "Tsentralnyi" (Central, in Ukrainian).