Franklin-Tong was born in London.[4] She was an undergraduate student at the University of Birmingham, where she majored in biological sciences. She remained at Birmingham for her graduate studies, where she completed a PhD on the genetics of self-incompatibility in Papaver rhoeas in 1986.[5]
Franklin-Tong developed an in vitrobioassay that allowed for the first investigations into the cell biology of self-incompatibility, unravelling the mechanisms that underpin the rejection of pollen that is not compatible. She identified an intricate intracellular signalling network that regulates this self-incompatibility and culminates in cell death.[4]
The pollen S-determinant (PrpS) can be functionally expressed in Arabidopsis thaliana, a model plant that is self-compatibile.[9] When transgenic Arabidopsis thaliana pollen is exposed to recombinant Papaver rhoeas a similar response occurs to those detected in incompatible Papaver rhoeas pollen. This indicates that PrpS is a species with no self-incompatibility that diverged over one hundred million years ago.[4]