Hoyos' career began with Newell's Old Boys, firstly in the youth ranks before making the move into senior football.[3] He made his Newell's Old Boys debut on 20 November 2014 in an Argentine Primera División defeat to Defensa y Justicia.[1] Before that, Hoyos spent time out on loan at two clubs. First, he joined San Martín of Torneo Argentino A before completing a move to Primera B Nacional side Gimnasia y Esgrima.[1] He made seventy-one appearances across two seasons for Gimnasia prior to returning to Newell's to make his debut for them.[1] 2015 saw Hoyos join another Primera B Nacional team, Instituto, permanently.[1]
Sixty-three league matches later he departed to join Argentine Primera División club Atlético de Rafaela in 2016.[1][2] Rafaela were relegated at the end of 2016–17 season, Hoyos subsequently left to rejoin Instituto.[4] His second debut for the club came on 21 August 2017 in the Copa Argentina against River Plate.[1] He made his 200th league appearance in the following November versus previous club Atlético de Rafaela.[1] July 2018 saw Hoyos complete a move to Vélez Sarsfield of the Primera División.[1]