Lincoln made his professional debut for Flamengo at only 16 years old in a Brazilian Série A match on 19 November 2017 against Corinthians at Ilha do Urubu. He came to the field as a 65th-minute substitute as Flamengo won 3–0.[3] One week later he played his second professional match, this time against Santos, Flamengo lost 2–1.
Lincoln scored his first goal at national level in a 2018 Copa do Brasil thrilling 1–1 match against Grêmio at Arena do Grêmio. He came to the pitch at the 77th minute and scored the equalizer at the 94th minute with a pass from Renê.[6]
Vissel Kobe
On 20 January 2021, Lincoln signed with Japanese side Vissel Kobe.[7] On 8 March 2024 his contract was rescinded by mutual consent.[8]
Rheindorf Altach
In the summer of 2024, Lincoln signed a contract with Rheindorf Altach in Austria for two seasons, with a club option for a third.[9]