Hypericum hyssopifolium is a small perennial herb that grows 0.3–0.6 meters tall. Its stems sometimes have scattered amber glands up to the inflorescence. The leaves on the main stem are larger than those on auxiliary stems, and have a flat base and round point, with small pale glands. Each inflorescence can have many flowers from up to ten difference nodes. The flowers are around 1 centimeter in diameter, with globe-shaped buds. The petals are yellow or golden and are the shape of a lengthened oval. They have a narrow stalk-like base and a rounded point. Each flower has around thirty stamens, the longest of which are 0.9 cm. The seeds are dark reddish-brown and 1.8 mm long.[3]
Plants of the species which are in the Balkan population vary from this description in several minor ways, most notably that their leaves are shaped differently, with acute points instead of rounded ones.[3]