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The Gottorfer Codex (German) or det gottorpske kodeks (Danish) is a four volume work commissioned by Frederick III, Duke of Holstein-Gottorp between 1649 and 1659 to depict the wide assortment of plants that grew in the ducal gardens at Gottorf Castle (Gottorp) in the duchy of Schleswig.
Work on the codex stopped after the death of Duke Frederick III in 1659. The codex has been the property of the Danish state since the Great Northern War (1700-1721) when Gottorf Castle and the duke's portion of the duchy of Schleswig were annexed to the Danish crown.
In 2009, a digital version of the codex was created by the National Gallery of Denmark with financial support by the Foundation of State Museums in Schleswig-Holstein.