In December 2009, Etxeberria made himself available for the vacant managerial position at Dorchester Town in the Conference South, the sixth tier of the English football league system.[5] He was made a consultant and first-team coach while the search for a permanent manager was delayed by legal issues between the club and its former chairman.[6] In March 2010, caretaker manager Ashley Vickers was given the job permanently and Etxeberria returned to Spain to become director of football at Deportivo Alavés in the Segunda División B.[7] He resigned from the club from Vitoria-Gasteiz in May 2011, with weeks of his contract remaining.[8]
Etxeberria was hired as manager and director at UD Salamanca in June 2012, with the third-tier club being in serious economic problems.[9] He was dismissed from his coaching position the following 4 March and replaced with B-team manager José María Hernández, as the club was dissolved at the end of the season.[10]UDS was succeeded by the corporately related Salamanca CF UDS, and the fan-driven Unionistas de Salamanca CF; in 2019 Etxeberria said that he had spoken to Salamanca's mayor in a failed attempt to ensure there was only one successor.[11]
Portugal and Australia
In August 2013, Etxeberria turned down an approach from Caudal Deportivo in Spain's third tier and a youth team from his hometown in order to join Atlético Clube de Portugal in the neighbouring country's Segunda Liga.[12] Having taken 12 points from 14 games, and with the Lisbon-based club in 19th place, he left on 9 November.[13]
After three years as director of CD Hernani in his native Gipuzkoa, Etxeberria headed abroad again in June 2017, on an 18-month deal at Sydney Olympic FC of the second-tier National Premier Leagues NSW.[2] He was sacked on 2 March 2018 as the first dismissal of the season, and replaced by Abbas Saad.[14] In February 2020, he and Chris Taylor of South Melbourne FC were awarded AU$80,000 in compensation each by a FIFA tribunal, which ruled that they were wrongfully dismissed.[15]
Return to Spain
In June 2018, Etxeberria returned to Salamanca as director of Unionistas.[16] He left in November 2019, with the club second from bottom.[17] The following January, he was hired on an 18-month deal at Real Unión in his home province.[18] On 25 February 2020, the club from Irun sacked Alberto Iturralde and put Etxeberria in caretaker charge as manager.[19] In June 2021, with the club promoted to the new Primera Federación and under ownership of Unai Emery's family, he signed a one-year contract extension.[20] He left at its end.[21]
Etxeberria was hired in another directorial role at CF Rayo Majadahonda in June 2022.[22] He lasted only weeks before being replaced by Néstor Susaeta.[23] In January 2023, he returned to the city of Zaragoza after nearly 15 years away, joining CD Ebro in the same position.[24]