Following a surprise defeat to Kyzylzhar in the 2016 Kazakhstan Cup, manager Dmitriy Ogai left the club by mutual consent,[2] with Oleg Lotov being appointed as interim manager on 30 April 2016.[3] Lotov was replaced with Omari Tetradze as the club's manager on 30 May 2016.[4]
Prior to the start of the season, Vladimir Nikitenko was appointed as Tobol's manager following the expiration of Robert Yevdokimov's contract. On 1 August, Vladimir Nikitenko resigned as manager after Tobol were eliminated from the Europa League.[5]Andrei Miroshnichenko was appointed as Caretaker manager before Marek Zub was announced as Tobol's new manager on 6 August 2018.[6]
On 31 December 2018, Zub left Tobol after his contract wasn't renewed,[7] and Vladimir Gazzayev was appointed as the club's new manager.[8] Gazzayev resigned as manager on 21 July 2019 after Tobol were eliminated from the 2019–20 UEFA Europa League by Jeunesse Esch.[9]
On 14 December 2019, Grigori Babayan was appointed as manager of FC Tobol.[10] On 17 June 2021, Babayan left his role as Head Coach by mutual consent to take up a coaching role at CSKA Moscow.[11][12] The following day, 18 June 2021, Alexander Moskalenko has appointed as Acting Head Coach.[13] On 16 May 2022, Moskalenko left his role at Tobol, with Milan Milanović being appointed as the clubs new Head Coach on 20 May 2022.[14][15]
On 10 January 2023, Milić Ćurčić was appointed as the new Head Coach of Tobol.[16]
Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply. Players may hold more than one non-FIFA nationality.