Flattop Creek, Sugar Creek, Wildcat Creek, Leroy Creek, Ramp Branch, Curtis Creek, Cranberry Creek, Little Elk Creek, Jones Branch, Sugar Hollow Branch, Little Laural Branch, Heaton Branch
• right
Hanging Rock Creek, Shawneehaw Creek, Whitehead Creek, Horney Branch, Peavine Branch, Skalley Branch, Fall Creek, Nowhere Branch, Asher Branch
With the headwaters beginning from the Northwestern slopes of Peak Mountain, it flows west to Banner Elk then towards Elk Park. For most of the river's course, it runs in a deep gorge. Just before the Elk River crosses into Tennessee it flows over "Big Falls" (also called "Elk Falls"), a locally-known attraction which is approximately a 60-foot (18 m) drop. It then flows down a narrow, relatively steep valley to the tiny community of Elk Mills, which is named for a former water-powered mill built on this river at this point by early white settlers. Between the state line and Elk Mills, it flows over Twisting Falls, a drop of approximately 30 feet (nine m). At this point, it is bridged by U.S. Highway 321. Shortly below this point, its waters become slack as part of an embayment of Watauga Lake, a sizable reservoir of the Watauga Dam Project of the Tennessee Valley Authority. This project has flooded the actual site of the original confluence of the Elk and Watauga rivers.