The club was founded in 2018 as H&H Export Sébaco FC. The club was founded to replace the defunct team Deportivo Sebaco.
In 2021, Sebaco won promotion to the Primera Division for the very first time by defeating Chinandega FC in a promotion relegation playoff 5–3 on aggregate.[1]
In 2022, the club changed its name from H&H Export Sébaco FC to Club Sport Sebaco.
Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply. Players may hold more than one non-FIFA nationality.
Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply. Players may hold more than one non-FIFA nationality.