On October 8, 2016, Northern Colorado self-imposed a post-season ban amid an ongoing NCAA investigation into program violations, and did not participate.[1]
Seeds
Only 11 of the 12 teams in the conference participated in the tournament due to Northern Colorado's self-imposed ban. Teams were seeded by conference record, with a tiebreaker system used to seed teams with identical conference records. The top five teams received a first round bye.
The Fighting Hawks received the automatic bid to the NCAA tournament; no other Big Sky members were invited to the tournament or the NIT. North Dakota was seeded fifteenth in the West regional and lost 100–82 to Arizona in the first round in Salt Lake City. It was the eleventh consecutive year that the Big Sky representative lost in the first round.