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Decades:	1980s; 1990s; 2000s; 2010s; 2020s;
See also:	Other events of 2006; Timeline of Bosnian and Herzegovinian history;

The following lists events that happened during the year 2006 in Bosnia and Herzegovina.

Incumbents

Presidency:
- Sulejman Tihić (until November 6), Haris Silajdžić (starting November 6)
- Ivo Miro Jović (until November 6), Željko Komšić (starting November 6)
- Borislav Paravac (until November 6), Nebojša Radmanović (starting November 6)
Prime Minister: Adnan Terzić

February 8 - Muslims in Sarajevo organized a protest against the Muhammad cartoons. They delivered a letter demanding an apology for the publication of the cartoons to staff at the Danish, Norwegian and French embassies. The flags of Norway, Denmark and Croatia were burnt.^[1]

^ "Bosnian Muslim Protesters Burn Danish, Norwegian And Croatian Flags In Sarajevo". Turkish Weekly. February 9, 2006. Archived from the original on February 21, 2006. Retrieved January 4, 2015.