The 1999–2000 season was the 54th season in FK Partizan's existence. This article shows player statistics and matches that the club played during the 1999–2000 season.
Source: RSSSF.org Rules for classification: 1) points; 2) goal difference; 3) number of goals scored. Napredak Kruševac from Second League qualify for 2000–01 UEFA Cup as runner-up of 1999–2000 FR Yugoslavia Cup. (C) Champions