The 1965 NAIA football season was the tenth season of college football sponsored by the NAIA.
The season was played from August to November 1965, culminating in the 1965 NAIA Championship Bowl, played this year again at ARC Stadium in Augusta, Georgia.
Championship: East Stroudsburg 26, Indiana (PA) 10
$ – Conference champion
x – Division champion/co-champions
y – Championship game participant
* – Edinboro forfeited four conference victories—over IUP, Clarion, Shippensburg, and California—but NCAA and Edinboro records do not reflect the forfeits in the team's overall record.